6DE6
2.1 A resolution structure of histamine dehydrogenase from Rhizobium sp. 4-9
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 103.223, 105.314, 140.038 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.427 - 2.100 |
R-factor | 0.166 |
Rwork | 0.164 |
R-free | 0.20220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k30 |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.2) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.430 | 2.140 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.106 | 1.222 |
Rmeas | 0.115 | 1.329 |
Rpim | 0.045 | 0.519 |
Total number of observations | 586744 | |
Number of reflections | 89613 | 4554 |
<I/σ(I)> | 12.7 | |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 6.5 | 6.5 |
CC(1/2) | 0.998 | 0.640 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.1M Na HEPES, 18% w/v PEG 12000 |