6DB6
Crystal structure of anti-HIV-1 V3 Fab 311-11D in complex with a HIV-1 gp120 V3 peptide from MN strain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-28 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.92010 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.568, 69.157, 141.887 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.218 - 1.978 |
R-factor | 0.1761 |
Rwork | 0.173 |
R-free | 0.21640 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.931 |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.220 | 2.049 |
High resolution limit [Å] | 1.978 | 1.978 |
Rmerge | 0.117 | 0.784 |
Number of reflections | 32451 | |
<I/σ(I)> | 10.1 | |
Completeness [%] | 98.7 | |
Redundancy | 6.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 292 | 0.1 M Imidazole pH 6.5, 15% PEG 8000, 30% Isopropanol |