6DB5
Crystal structure of anti-HIV-1 V3 Fab TA6 in complex with a HIV-1 gp120 V3 peptide from NY5 strain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-02 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.91979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 78.616, 67.361, 103.038 |
Unit cell angles | 90.00, 100.25, 90.00 |
Refinement procedure
Resolution | 29.790 - 2.599 |
R-factor | 0.2304 |
Rwork | 0.227 |
R-free | 0.28270 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.479 |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.790 | 2.692 |
High resolution limit [Å] | 2.599 | 2.599 |
Rmerge | 0.136 | 0.696 |
Number of reflections | 32650 | |
<I/σ(I)> | 6.2 | |
Completeness [%] | 99.1 | |
Redundancy | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 292 | 0.1 M Na Citrate pH 5.6, 1.5 M (NH4)2SO4, 5% Glycerol, and 15% Isopropanol |