6DAZ
X-ray crystal structure of VioC bound to Fe(II), 3S-hydroxy-L-homoarginine, and succinate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-23 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 81.788, 66.388, 63.042 |
Unit cell angles | 90.00, 109.60, 90.00 |
Refinement procedure
Resolution | 59.390 - 1.940 |
R-factor | 0.2026 |
Rwork | 0.201 |
R-free | 0.23910 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.014 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.390 | 50.000 | 1.980 |
High resolution limit [Å] | 1.950 | 5.290 | 1.950 |
Rmerge | 0.076 | 0.020 | 0.448 |
Rmeas | 0.088 | 0.023 | 0.520 |
Rpim | 0.045 | 0.012 | 0.264 |
Total number of observations | 86615 | ||
Number of reflections | 22782 | 1200 | 1102 |
<I/σ(I)> | 7.2 | ||
Completeness [%] | 98.4 | 99.8 | 97.5 |
Redundancy | 3.8 | 3.7 | 3.8 |
CC(1/2) | 0.999 | 0.894 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 8.5 | 293 | 2-oxoglutarate, Tris-HCl |