6D9N
Crystal structure of an organic hydroperoxide resistance protein from Elizabethkingia anophelis with crystallant-derived thiocyanate bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-18 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 47.390, 50.030, 57.980 |
Unit cell angles | 90.00, 102.63, 90.00 |
Refinement procedure
Resolution | 40.394 - 1.200 |
R-factor | 0.141 |
Rwork | 0.141 |
R-free | 0.15750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1n2f |
RMSD bond length | 0.011 |
RMSD bond angle | 1.287 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX ((dev_3092: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.230 |
High resolution limit [Å] | 1.200 | 5.370 | 1.200 |
Rmerge | 0.047 | 0.026 | 0.572 |
Rmeas | 0.054 | 0.030 | 0.660 |
Number of reflections | 82449 | 976 | 6071 |
<I/σ(I)> | 15.13 | 43.57 | 2.45 |
Completeness [%] | 99.6 | 99.1 | 99.1 |
Redundancy | 4.076 | 3.901 | 4.02 |
CC(1/2) | 0.999 | 0.998 | 0.861 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 290 | 26.04 mg/mL ElanA.00074.a.B1.PW38309 + MCSG1 D4 (294273d4) (200 mM sodium thiocyanate, pH 6.9, 20% w/v PEG3350), cryoprotectant: 15% ethylene glycol, puck id hay3-7 |