6D4L
Joint X-ray/neutron structure of DNA oligonucleotide d(GTGGCCAC)2 with 2'-SeCH3 modification on Cyt5
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 HF |
| Temperature [K] | 293 |
| Detector technology | IMAGE PLATE |
| Collection date | 2015-01-22 |
| Detector | RIGAKU RAXIS IV++ |
| Wavelength(s) | 1.54 |
| Spacegroup name | P 43 21 2 |
| Unit cell lengths | 42.695, 42.695, 24.410 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 20.000 - 2.000 |
| Rwork | 0.250 |
| R-free | 0.31200 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.000 |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-3000 |
| Phasing software | PHASER |
| Refinement software | nCNS (1.0.0) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 40.000 | 2.110 | 1.620 |
| High resolution limit [Å] | 1.560 | 2.000 | 1.560 |
| Rmerge | 0.033 | 0.289 | 0.417 |
| Number of reflections | 3414 | ||
| <I/σ(I)> | 45.8 | 3.5 | 2.1 |
| Completeness [%] | 96.8 | 58.1 | 76.8 |
| Redundancy | 6.7 | 2.8 | 3.3 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 303 | 0.1 M magnesium acetate, 30% MPD, 0.1 M MES |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 303 | 0.1 M magnesium acetate, 30% MPD, 0.1 M MES |






