6D3N
Crystal structure of h4-1BB ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-13 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97 |
Spacegroup name | H 3 2 |
Unit cell lengths | 73.167, 73.167, 162.814 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 59.050 - 2.700 |
R-factor | 0.2119 |
Rwork | 0.208 |
R-free | 0.25230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cpr |
RMSD bond length | 0.008 |
RMSD bond angle | 1.267 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (0.6.3) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.050 | 59.050 | 2.830 |
High resolution limit [Å] | 2.700 | 8.960 | 2.700 |
Rmerge | 0.095 | 0.072 | 0.859 |
Rmeas | 0.101 | 0.078 | 0.913 |
Rpim | 0.033 | 0.028 | 0.303 |
Total number of observations | 44504 | ||
Number of reflections | 4818 | 157 | 630 |
<I/σ(I)> | 11.6 | ||
Completeness [%] | 99.6 | 98.5 | 99.4 |
Redundancy | 9.2 | 7.9 | 8.4 |
CC(1/2) | 0.996 | 0.993 | 0.927 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 295 | 0.085M tri- Na citrate, pH 5.6, 25.5% PEG 4000 0.17M Amm acetate 15% glycerol |