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6D20

Crystal structure of Tyrosine-protein kinase receptor in complex with 5-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4(3H)-one and 5-{[2,4-dichloro-5-(pyridin-2-yl)benzene-1-carbonyl]amino}-N-(2-hydroxy-2-methylpropyl)-1-phenyl-1H-pyrazole-3-carboxamide Inhibitors

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]93
Detector technologyCCD
Collection date2015-01-29
DetectorRAYONIX MX-300
Wavelength(s)1.0
Spacegroup nameC 1 2 1
Unit cell lengths113.940, 45.810, 79.490
Unit cell angles90.00, 127.04, 90.00
Refinement procedure
Resolution45.470 - 1.940
R-factor0.1722
Rwork0.170
R-free0.20720
RMSD bond length0.010
RMSD bond angle0.970
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareBUSTER
Refinement softwareBUSTER
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.020
High resolution limit [Å]1.9404.2001.950
Rmerge0.1150.0490.708
Number of reflections2396024882297
<I/σ(I)>7.9
Completeness [%]98.498.897.1
Redundancy3.83.73.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8294Well volume: 30.0 uL Well Ingredients: Polymer: 10.0 %w/v (6.0 uL of stock 50.0 %w/v) PEG 3350 Buffer: 16.0 %v/v (4.8 uL of stock 100.0 %v/v) tacsimate (pH 8.00) Organic (non-volatile): 10.0 %v/v (3.0 uL of stock 100.0 %v/v) Ethylene glycol Additive: 0.025 M (1.5 uL of stock 0.5 M) TCEP hydrochloride Plate setup temperature: 13 C Plate incubation temperature: 21 C Drop volume from well: 0.2 uL Drop protein volume: 0.4 uL Protein: 6.30 mg/mL (0.17 mM) Compound1: 1.00 mM (to aid crystallization). Compound23 (allostric inhibitor): 1.3ul 50mM compound23 DMSO stock in 133ul protein (0.50 mM)

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PDB entries from 2024-07-10

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