6D1I
Crystal structure of NDM-1 complexed with compound 12
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 22-BM |
| Synchrotron site | APS |
| Beamline | 22-BM |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2016-12-06 |
| Detector | MARMOSAIC 300 mm CCD |
| Wavelength(s) | 1.00 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 41.650, 59.940, 41.920 |
| Unit cell angles | 90.00, 97.85, 90.00 |
Refinement procedure
| Resolution | 29.970 - 1.100 |
| R-factor | 0.1406 |
| Rwork | 0.139 |
| R-free | 0.16430 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4tzf |
| Data reduction software | iMOSFLM (7.2.1) |
| Data scaling software | SCALA (3.3.22) |
| Phasing software | PHASER (2.8.0) |
| Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.970 | 29.970 | 1.160 |
| High resolution limit [Å] | 1.100 | 3.480 | 1.100 |
| Rmerge | 0.061 | 0.054 | 0.304 |
| Rmeas | 0.072 | 0.053 | 0.063 |
| Rpim | 0.037 | 0.027 | 0.032 |
| Total number of observations | 289220 | ||
| Number of reflections | 81483 | 2678 | 10991 |
| <I/σ(I)> | 10.7 | ||
| Completeness [%] | 98.6 | 99.8 | 91.6 |
| Redundancy | 3.5 | 3.8 | 2.6 |
| CC(1/2) | 0.995 | 0.987 | 0.870 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 50 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000 |






