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6D1I

Crystal structure of NDM-1 complexed with compound 12

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-BM
Synchrotron siteAPS
Beamline22-BM
Temperature [K]100
Detector technologyCCD
Collection date2016-12-06
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.00
Spacegroup nameP 1 21 1
Unit cell lengths41.650, 59.940, 41.920
Unit cell angles90.00, 97.85, 90.00
Refinement procedure
Resolution29.970 - 1.100
R-factor0.1406
Rwork0.139
R-free0.16430
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4tzf
Data reduction softwareiMOSFLM (7.2.1)
Data scaling softwareSCALA (3.3.22)
Phasing softwarePHASER (2.8.0)
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]29.97029.9701.160
High resolution limit [Å]1.1003.4801.100
Rmerge0.0610.0540.304
Rmeas0.0720.0530.063
Rpim0.0370.0270.032
Total number of observations289220
Number of reflections81483267810991
<I/σ(I)>10.7
Completeness [%]98.699.891.6
Redundancy3.53.82.6
CC(1/2)0.9950.9870.870
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293.1550 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000

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