Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6D1G

Crystal structure of NDM-1 complexed with compound 9

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-BM
Synchrotron siteAPS
Beamline22-BM
Temperature [K]100
Detector technologyCCD
Collection date2016-11-25
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.00
Spacegroup nameP 1 21 1
Unit cell lengths41.500, 60.150, 41.850
Unit cell angles90.00, 98.10, 90.00
Refinement procedure
Resolution27.310 - 1.150
R-factor0.1351
Rwork0.134
R-free0.16420
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4tzf
Data reduction softwareiMOSFLM (7.2.1)
Data scaling softwareSCALA (3.3.22)
Phasing softwarePHASER (2.7.16)
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]27.31027.3101.210
High resolution limit [Å]1.1503.6401.150
Rmerge0.0540.0390.219
Rmeas0.0630.0460.046
Rpim0.0320.0230.023
Number of reflections6777223239501
<I/σ(I)>13.6
Completeness [%]94.098.990.3
Redundancy3.93.83.7
CC(1/2)0.9980.9970.942
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293.1550 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon