Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6D1F

Crystal structure of NDM-1 complexed with compound 8

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-BM
Synchrotron siteAPS
Beamline22-BM
Temperature [K]100
Detector technologyCCD
Collection date2016-11-25
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.00
Spacegroup nameP 1 21 1
Unit cell lengths41.510, 60.100, 41.750
Unit cell angles90.00, 97.97, 90.00
Refinement procedure
Resolution27.320 - 1.150
R-factor0.1469
Rwork0.145
R-free0.17910
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4tzf
Data reduction softwareiMOSFLM (7.2.1)
Data scaling softwareSCALA (3.3.22)
Phasing softwarePHASER (2.7.16)
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]27.84027.8401.210
High resolution limit [Å]1.1503.6401.150
Rmerge0.0790.0410.533
Rmeas0.0930.0530.048
Rpim0.0480.0270.025
Number of reflections72080234710516
<I/σ(I)>8.6
Completeness [%]100.099.799.9
Redundancy3.63.83.4
CC(1/2)0.9970.9950.664
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293.1550 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon