6D1A
Crystal structure of NDM-1 complexed with compound 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-06 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.780, 59.860, 42.020 |
Unit cell angles | 90.00, 97.78, 90.00 |
Refinement procedure
Resolution | 27.920 - 1.250 |
R-factor | 0.1488 |
Rwork | 0.147 |
R-free | 0.18100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tzf |
Data reduction software | iMOSFLM (7.2.1) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.0) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 27.920 | 27.920 | 1.320 |
High resolution limit [Å] | 1.250 | 3.950 | 1.250 |
Rmerge | 0.072 | 0.040 | 0.944 |
Rmeas | 0.084 | 0.044 | 0.047 |
Rpim | 0.043 | 0.022 | 0.024 |
Number of reflections | 56079 | 1848 | 8056 |
<I/σ(I)> | 8.5 | ||
Completeness [%] | 98.8 | 99.7 | 97.4 |
Redundancy | 3.8 | 3.8 | 3.7 |
CC(1/2) | 0.997 | 0.994 | 0.381 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 50 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000 |