6CWP
X-ray crystal structure of Flavobacterium johnsoniae dimanganese(II) ribonucleotide reductase beta subunit (anaerobic)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-28 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 31 |
Unit cell lengths | 53.455, 53.455, 220.747 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.000 - 1.920 |
R-factor | 0.2077 |
Rwork | 0.206 |
R-free | 0.24560 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.246 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.950 |
High resolution limit [Å] | 1.920 | 5.210 | 1.920 |
Rmerge | 0.086 | 0.047 | 0.814 |
Rmeas | 0.095 | 0.051 | 0.927 |
Rpim | 0.040 | 0.019 | 0.429 |
Number of reflections | 53468 | 2714 | 2336 |
<I/σ(I)> | 8.8 | ||
Completeness [%] | 99.0 | 99.6 | 88.1 |
Redundancy | 5 | 6.6 | 3.7 |
CC(1/2) | 0.998 | 0.547 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.2 M magnesium acetate, 20% (w/v) PEG 3350 |