6CWB
Structure of alpha-GSA[8,4P] bound by CD1d and in complex with the Va14Vb8.2 TCR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-03-27 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.00 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 78.310, 190.269, 151.018 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.220 - 2.850 |
R-factor | 0.2182 |
Rwork | 0.215 |
R-free | 0.27500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2q7y |
RMSD bond length | 0.008 |
RMSD bond angle | 1.291 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 95.130 | 40.000 | 2.950 |
High resolution limit [Å] | 2.850 | 6.130 | 2.850 |
Rmerge | 0.173 | 0.077 | 0.674 |
Rmeas | 0.199 | 0.090 | 0.773 |
Rpim | 0.097 | 0.046 | 0.373 |
Number of reflections | 26745 | 2776 | 2627 |
<I/σ(I)> | 6.6 | ||
Completeness [%] | 99.6 | 97.7 | 99.8 |
Redundancy | 4.2 | 3.9 | 4.3 |
CC(1/2) | 0.993 | 0.662 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.1 | 295 | 0.06M Citric acid, 0.04M BIS-TRIS propane, 16% PEG 3350, pH 4.1 |