6CTW
Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CCL2, beta, gamma dCTP analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-05-07 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.894, 79.523, 55.495 |
Unit cell angles | 90.00, 107.82, 90.00 |
Refinement procedure
Resolution | 22.287 - 1.981 |
R-factor | 0.1773 |
Rwork | 0.174 |
R-free | 0.21940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.007 |
RMSD bond angle | 0.995 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.010 |
High resolution limit [Å] | 1.980 | 5.370 | 1.980 |
Rmerge | 0.060 | 0.035 | 0.349 |
Rmeas | 0.070 | 0.041 | 0.436 |
Rpim | 0.036 | 0.021 | 0.258 |
Total number of observations | 103018 | ||
Number of reflections | 28519 | 1491 | 1224 |
<I/σ(I)> | 10.5 | ||
Completeness [%] | 97.1 | 98.1 | 84.5 |
Redundancy | 3.6 | 3.7 | 2.4 |
CC(1/2) | 0.998 | 0.825 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 16-18% PEG 3350 |