6CTQ
Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with dCTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-14 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.894, 79.789, 55.414 |
Unit cell angles | 90.00, 107.65, 90.00 |
Refinement procedure
Resolution | 25.066 - 1.870 |
R-factor | 0.1782 |
Rwork | 0.175 |
R-free | 0.22830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.007 |
RMSD bond angle | 0.902 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.900 |
High resolution limit [Å] | 1.870 | 5.070 | 1.870 |
Rmerge | 0.057 | 0.045 | 0.432 |
Total number of observations | 117299 | ||
Number of reflections | 33989 | 1776 | 1258 |
<I/σ(I)> | 12.3 | ||
Completeness [%] | 97.2 | 98.9 | 71.6 |
Redundancy | 3.5 | 3.6 | 2.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 16-18% PEG 3350 |