6CK1
Crystal structure of Paracoccus denitrificans AztD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-26 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.510, 96.380, 175.520 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 79.740 - 2.150 |
R-factor | 0.1815 |
Rwork | 0.179 |
R-free | 0.23710 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.066 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 79.740 | 2.230 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.097 | 0.609 |
Rmeas | 0.104 | 0.678 |
Rpim | 0.037 | 0.293 |
Number of reflections | 80583 | 6497 |
<I/σ(I)> | 19.7 | 2.8 |
Completeness [%] | 96.8 | 79.02 |
Redundancy | 7.5 | 4.89 |
CC(1/2) | 0.998 | 0.803 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.4 | 292 | 10 mg/mL protein was combined in a 1:1 ratio with reservoir solution containing 24% PEG 4000, 0.1 M sodium acetate pH 5.4, 0.1 M magnesium nitrate, 2.5% w/v 1-ethyl-3-methylimidazolium chloride |