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6CK0

Crystal Structure of Biotin Acetyl Coenzyme A Carboxylase Synthetase from Helicobacter pylori with bound Biotinylated ATP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2017-11-24
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97872
Spacegroup nameP 1
Unit cell lengths52.890, 57.080, 57.030
Unit cell angles122.14, 94.73, 107.85
Refinement procedure
Resolution47.950 - 2.250
R-factor0.1752
Rwork0.171
R-free0.22070
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3l1a
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMR-Rosetta
Refinement softwarePHENIX ((1.13_2998))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.95047.9502.310
High resolution limit [Å]2.25010.0602.250
Rmerge0.0480.0220.452
Rmeas0.0550.0260.523
Total number of observations93167
Number of reflections237672701625
<I/σ(I)>18.2942.163.43
Completeness [%]97.195.789.4
Redundancy3.923.6483.958
CC(1/2)0.9990.9990.937
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4290HepyC.19466.a.B1.PS38345 at 23.36 mg/ml was incubated with 6 mM MgCl2, ATP, and biotin, then mixed 1:1 with JCSG+(b1): 0.1 M sodium citrate tribasic/ citric acid, pH=4.0, 0.8 M ammonium sulfate. Crystal cryoprotected with 25% ethylene glycol. Tray: 295125b1, puck: xga0-9

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PDB entries from 2024-07-17

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