6CGK
Structure of the HAD domain of effector protein Lem4 (lpg1101) from Legionella pneumophila (inactive mutant)with phosphate bound in the active site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-04-05 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 4 21 2 |
Unit cell lengths | 105.627, 105.627, 36.255 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.238 - 1.668 |
R-factor | 0.1901 |
Rwork | 0.188 |
R-free | 0.22640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cgj |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 52.814 | 52.814 | 1.674 |
High resolution limit [Å] | 1.668 | 7.734 | 1.668 |
Rmerge | 0.087 | 0.039 | 1.359 |
Rmeas | 0.090 | 0.042 | 1.408 |
Rpim | 0.024 | 0.013 | 0.367 |
Total number of observations | 351125 | ||
Number of reflections | 24546 | 295 | 232 |
<I/σ(I)> | 19.7 | ||
Completeness [%] | 100.0 | 95.2 | 97.1 |
Redundancy | 14.3 | 10.3 | 14.4 |
CC(1/2) | 0.999 | 0.999 | 0.915 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 0.1 M Bis-Tris 6.5, 22% PEG 3350, 0.2 M Mg acetate, 0.6 M NaCl |