6CF2
Crystal structure of HIV-1 Rev (residues 1-93)-RNA aptamer complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-16 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 64.190, 97.680, 87.836 |
Unit cell angles | 90.00, 109.70, 90.00 |
Refinement procedure
Resolution | 38.000 - 3.000 |
Rwork | 0.208 |
R-free | 0.24100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB entries 5DHV & 1ULL |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1-2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.000 | 3.110 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.088 | 0.634 |
Rmeas | 0.124 | 0.897 |
Rpim | 0.088 | 0.634 |
Number of reflections | 10201 | |
<I/σ(I)> | 7.1 | 1.7 |
Completeness [%] | 99.2 | 99.2 |
Redundancy | 2 | 2 |
CC(1/2) | 0.975 | 0.424 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 291.15 | 2% v/v 1,4-dioxane, 0.1 M Tris, pH 8.0, 15% w/v PEG3350 |