6CE1
Crystal structure of Peptidyl Arginine Deiminase Type III (PADI3)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.953694 |
Spacegroup name | H 3 2 |
Unit cell lengths | 115.023, 115.023, 328.487 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.240 - 2.800 |
R-factor | 0.2363 |
Rwork | 0.234 |
R-free | 0.27350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dew |
RMSD bond length | 0.004 |
RMSD bond angle | 0.776 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX (1.13_2998) |
Refinement software | phenix.refine (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.240 | 49.240 | 2.950 |
High resolution limit [Å] | 2.800 | 8.850 | 2.800 |
Rpim | 0.132 | 0.017 | 2.160 |
Number of reflections | 21054 | 741 | 3035 |
<I/σ(I)> | 8 | 31.6 | 0.8 |
Completeness [%] | 100.0 | 99.4 | 100 |
Redundancy | 18.6 | 17.4 | 17.5 |
CC(1/2) | 0.993 | 0.998 | 0.334 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | Sodium HEPES + MOPS (acid) Ethylene glycols PEG 8000 |