6CDP
Vaccine-elicited HIV-1 neutralizing antibody vFP20.01 in complex with HIV-1 fusion peptide residue 512-519
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-23 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 60.460, 192.313, 87.558 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.166 - 2.456 |
R-factor | 0.2142 |
Rwork | 0.212 |
R-free | 0.26360 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.632 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.490 |
High resolution limit [Å] | 2.450 | 6.650 | 2.450 |
Rmerge | 0.118 | 0.062 | 0.423 |
Rmeas | 0.128 | 0.068 | 0.465 |
Rpim | 0.049 | 0.026 | 0.188 |
Total number of observations | 118218 | ||
Number of reflections | 18612 | 1005 | 757 |
<I/σ(I)> | 5.9 | ||
Completeness [%] | 97.4 | 96.1 | 80 |
Redundancy | 6.4 | 6.3 | 4.9 |
CC(1/2) | 0.995 | 0.878 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M Citric acid pH 3.5, 2 M AmSO4 |