6CDO
Structure of vaccine-elicited HIV-1 neutralizing antibody vFP16.02 in complex with HIV-1 fusion peptide residue 512-519
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-23 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 141.027, 141.027, 77.638 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.954 - 2.099 |
R-factor | 0.1956 |
Rwork | 0.194 |
R-free | 0.22640 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.972 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.108 | 0.051 | 0.931 |
Rmeas | 0.112 | 0.053 | 0.978 |
Rpim | 0.030 | 0.014 | 0.294 |
Total number of observations | 641724 | ||
Number of reflections | 46197 | 2535 | 2251 |
<I/σ(I)> | 5.7 | ||
Completeness [%] | 100.0 | 99.6 | 99.7 |
Redundancy | 13.9 | 13.4 | 9.7 |
CC(1/2) | 0.999 | 0.858 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M NaoAc pH 4.5, 2 M AmSO4 |