6CDN
Crystal structure of cysteine-bound ferrous form of the crosslinked Cl-Tyr157 human cysteine dioxygenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 65 |
Unit cell lengths | 131.326, 131.326, 34.188 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.987 - 2.055 |
R-factor | 0.1649 |
Rwork | 0.162 |
R-free | 0.19280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ic1 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.090 |
High resolution limit [Å] | 2.050 | 5.560 | 2.050 |
Rmerge | 0.135 | 0.090 | 0.436 |
Rmeas | 0.147 | 0.099 | 0.515 |
Rpim | 0.059 | 0.040 | 0.269 |
Total number of observations | 121064 | ||
Number of reflections | 21288 | 1137 | 954 |
<I/σ(I)> | 7.8 | ||
Completeness [%] | 99.2 | 98.4 | 91.9 |
Redundancy | 5.7 | 6.1 | 3.3 |
CC(1/2) | 0.991 | 0.934 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 295 | 0.1 M MES, 2 M ammonium sulfate, 2% PEG400 |