6CDH
Crystal structure of ferrous form of the Cl-Tyr157 human cysteine dioxygenase with both uncrosslinked and crosslinked cofactor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 65 |
Unit cell lengths | 131.426, 131.426, 34.241 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.019 - 1.821 |
R-factor | 0.1659 |
Rwork | 0.165 |
R-free | 0.18190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ic1 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.850 |
High resolution limit [Å] | 1.820 | 4.940 | 1.820 |
Rmerge | 0.164 | 0.150 | 0.452 |
Rmeas | 0.179 | 0.165 | 0.507 |
Rpim | 0.071 | 0.066 | 0.224 |
Total number of observations | 185068 | ||
Number of reflections | 30665 | 1623 | 1507 |
<I/σ(I)> | 6.4 | ||
Completeness [%] | 99.8 | 99.1 | 99.8 |
Redundancy | 6 | 6.4 | 4.9 |
CC(1/2) | 0.967 | 0.940 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 295 | 0.1 M MES, 2 M ammonium sulfate, 2% PEG400 |