6CDD
Npl4 zinc finger and MPN domains (Chaetomium thermophilum)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-16 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.283 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.858, 72.221, 193.543 |
Unit cell angles | 90.00, 96.71, 90.00 |
Refinement procedure
Resolution | 96.108 - 2.582 |
R-factor | 0.193296283219 |
Rwork | 0.192 |
R-free | 0.22861 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | cryo-EM density |
RMSD bond length | 0.002 |
RMSD bond angle | 0.529 |
Data scaling software | XDS |
Phasing software | PHENIX (1.12_2829) |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 96.110 | 2.675 |
High resolution limit [Å] | 2.582 | 2.582 |
Rmerge | 0.064 | 2.031 |
Rpim | 0.044 | 1.443 |
Number of reflections | 96089 | 7754 |
<I/σ(I)> | 9.82 | |
Completeness [%] | 95.2 | 77.79 |
Redundancy | 2.9 | 2.7 |
CC(1/2) | 0.998 | 0.322 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | 0.2 M Na/K phosphate pH 7, 9.2% wt/vol poly-gamma-glutamic acid, 0.2 M potassium thiocyanate, 5% propylene glycol |