6CD9
GID4 in complex with a peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-08-16 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.270, 40.022, 110.727 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.600 - 1.550 |
R-factor | 0.1744 |
Rwork | 0.173 |
R-free | 0.19280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | early version of PDB entry 6ccr |
RMSD bond length | 0.014 |
RMSD bond angle | 1.633 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.270 | 38.270 | 1.580 |
High resolution limit [Å] | 1.550 | 8.490 | 1.550 |
Rmerge | 0.053 | 0.020 | 0.423 |
Rmeas | 0.057 | 0.023 | 0.463 |
Rpim | 0.022 | 0.010 | 0.186 |
Total number of observations | 168776 | 1067 | 7208 |
Number of reflections | 25493 | 1200 | |
<I/σ(I)> | 27.2 | 74.2 | 4.5 |
Completeness [%] | 99.7 | 99.3 | 98 |
Redundancy | 6.6 | 5.2 | 6 |
CC(1/2) | 0.999 | 0.999 | 0.891 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 24% PEG3350, 2.8% Tacsimate pH 7.0 and 0.1M HEPES pH 7.5 |