6CD5
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor XMD17-26
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-08-20 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.120, 42.278, 84.879 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.272 - 1.580 |
R-factor | 0.1721 |
Rwork | 0.171 |
R-free | 0.19310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4wiv |
RMSD bond length | 0.012 |
RMSD bond angle | 1.313 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 84.880 | 1.610 |
High resolution limit [Å] | 1.580 | 1.580 |
Rmerge | 0.038 | 0.634 |
Rpim | 0.167 | |
Number of reflections | 20478 | 991 |
<I/σ(I)> | 5.6 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 5.9 | 6 |
CC(1/2) | 0.935 | 0.623 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 295 | 100mM Sodium Nitrate, 5% Ethylene Glycol, 18% (w/v) PEG3350 |