6CC3
Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-12 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.99 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 125.531, 68.288, 83.384 |
Unit cell angles | 90.00, 97.96, 90.00 |
Refinement procedure
Resolution | 46.658 - 2.698 |
R-factor | 0.2011 |
Rwork | 0.196 |
R-free | 0.24850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y1i |
RMSD bond length | 0.002 |
RMSD bond angle | 0.513 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.750 |
High resolution limit [Å] | 2.698 | 2.698 |
Rmerge | 0.110 | 0.802 |
Number of reflections | 19403 | 877 |
<I/σ(I)> | 15.63 | |
Completeness [%] | 99.0 | |
Redundancy | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 100 mM Magnesium Formate, 15% PEG 3350, 5mM Cadmium Chloride |