6C9E
Crystal structure of Cysteine desulfurase from Legionella pneumophila Philadelphia 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-01-12 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.400, 71.150, 113.470 |
Unit cell angles | 90.00, 102.36, 90.00 |
Refinement procedure
Resolution | 44.689 - 1.550 |
R-factor | 0.1406 |
Rwork | 0.140 |
R-free | 0.16370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5j8q as per Morda |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX ((1.13_2998)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.689 | 44.689 | 1.590 |
High resolution limit [Å] | 1.550 | 6.930 | 1.550 |
Rmerge | 0.057 | 0.027 | 0.443 |
Rmeas | 0.060 | 0.028 | 0.510 |
Number of reflections | 136069 | 1611 | 9992 |
<I/σ(I)> | 25.71 | 92.47 | 2.62 |
Completeness [%] | 99.9 | 99.4 | 99.8 |
Redundancy | 11.418 | 21.501 | 3.964 |
CC(1/2) | 1.000 | 1.000 | 0.805 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 285 | RigakuReagents JCSG+ B4: 10% PEG 8000, 8% Ethylene glycol, 100Mm HEPES free acid/NaOH pH 7.5: LepnA.01104.a.B1.PS38388 at 21.26mg/ml + 3mM Alanine: cryo: 15% EG: tray297375 b4: puck ugh2-4 |