6C8V
X-ray structure of PqqE from Methylobacterium extorquens
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-11-16 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.280 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 97.570, 97.570, 86.417 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.750 - 3.200 |
R-factor | 0.207 |
Rwork | 0.205 |
R-free | 0.24200 |
Structure solution method | SAD |
RMSD bond length | 0.004 |
RMSD bond angle | 0.620 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SHARP |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.260 |
High resolution limit [Å] | 3.200 | 8.670 | 3.200 |
Rmerge | 0.227 | 0.055 | 0.968 |
Rmeas | 0.061 | 1.078 | |
Rpim | 0.025 | 0.458 | |
Number of reflections | 15267 | 762 | 786 |
<I/σ(I)> | 4.1 | ||
Completeness [%] | 99.8 | 99.2 | 100 |
Redundancy | 5.3 | 5.3 | 5.1 |
CC(1/2) | 0.997 | 0.453 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.2 M magnesium formate, 20% polyethylene glycol 3,350 |