6C0P
Crystal structure of HIV-1 E138K mutant reverse transcriptase in complex with non-nucleoside inhibitor 25a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 162.832, 73.193, 109.308 |
Unit cell angles | 90.00, 100.19, 90.00 |
Refinement procedure
Resolution | 48.840 - 2.050 |
R-factor | 0.1819 |
Rwork | 0.180 |
R-free | 0.21540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g1q |
RMSD bond length | 0.005 |
RMSD bond angle | 0.638 |
Data reduction software | XDS (June 1, 2017) |
Data scaling software | XDS (June 1, 2017) |
Phasing software | PHENIX (1.12_2829) |
Refinement software | PHENIX ((1.12_2829)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.170 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.035 | 1.202 |
Rmeas | 0.041 | 1.415 |
Number of reflections | 76514 | 12221 |
<I/σ(I)> | 15.83 | 0.97 |
Completeness [%] | 96.1 | 95.1 |
Redundancy | 3.5 | 3.4 |
CC(1/2) | 0.999 | 0.377 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277.15 | 50 mM MES buffer (pH 6.0-6.6), 10% (v/v) polyethylene glycol (PEG) 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 10 mM spermine |