6BS2
Tubulin-RB3_SLD-TTL in complex with heterocyclic pyrimidine compound 8b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-26 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.101, 157.602, 181.509 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.754 - 2.650 |
R-factor | 0.1841 |
Rwork | 0.181 |
R-free | 0.23360 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.012 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.710 |
High resolution limit [Å] | 2.650 | 6.530 | 2.650 |
Rmerge | 0.118 | 0.055 | 0.942 |
Rmeas | 0.128 | 0.060 | 1.032 |
Rpim | 0.049 | 0.024 | 0.416 |
Total number of observations | 587933 | ||
Number of reflections | 88135 | 6213 | 5811 |
<I/σ(I)> | 4.7 | ||
Completeness [%] | 100.0 | 99.9 | 99.9 |
Redundancy | 6.7 | 6.4 | 6 |
CC(1/2) | 0.996 | 0.661 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.7 | 293 | 6% PEG 4000, 5% Glycerol, 0.1 M MES, 30 mM CaCl2, 30 mM MgCl2, pH 6.7 |