6BOV
Human APE1 substrate complex with an A/G mismatch adjacent the THF
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-07 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 |
Unit cell lengths | 44.358, 60.371, 73.343 |
Unit cell angles | 83.56, 78.43, 88.30 |
Refinement procedure
Resolution | 24.771 - 1.975 |
R-factor | 0.2122 |
Rwork | 0.211 |
R-free | 0.24230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dff |
RMSD bond length | 0.011 |
RMSD bond angle | 1.176 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.010 |
High resolution limit [Å] | 1.975 | 5.360 | 1.980 |
Rmerge | 0.071 | 0.047 | 0.473 |
Rmeas | 0.078 | 0.051 | 0.597 |
Rpim | 0.033 | 0.020 | 0.359 |
Number of reflections | 98881 | 2594 | 2652 |
<I/σ(I)> | 16 | ||
Completeness [%] | 100.0 | 100 | 99.8 |
Redundancy | 4.3 | 6.2 | 2.5 |
CC(1/2) | 0.998 | 0.801 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 291 | 7% PEG 20K, 100mM sodium Citrate, 15% glycerol, 5mM CaCl2 |