6BOS
Human APE1 substrate complex with an A/C mismatch adjacent the THF
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-02 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 |
Unit cell lengths | 44.275, 60.734, 72.475 |
Unit cell angles | 83.66, 79.24, 88.36 |
Refinement procedure
Resolution | 24.892 - 2.304 |
R-factor | 0.1955 |
Rwork | 0.193 |
R-free | 0.23580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dff |
RMSD bond length | 0.005 |
RMSD bond angle | 0.831 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.350 |
High resolution limit [Å] | 2.300 | 6.240 | 2.310 |
Rmerge | 0.089 | 0.049 | 0.509 |
Rmeas | 0.102 | 0.054 | 0.646 |
Rpim | 0.048 | 0.023 | 0.394 |
Number of reflections | 58993 | 1620 | 1630 |
<I/σ(I)> | 12.9 | ||
Completeness [%] | 99.8 | 100 | 99.3 |
Redundancy | 3.9 | 5.3 | 2.3 |
CC(1/2) | 0.997 | 0.781 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 291 | 7% PEG 20K, 100mM sodium Citrate, 15% glycerol, 5mM CaCl2 |