6BGF
Crystal structure of cysteine-bound ferrous form of the crosslinked human cysteine dioxygenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1 |
Spacegroup name | P 65 |
Unit cell lengths | 131.295, 131.295, 34.218 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.902 - 2.251 |
R-factor | 0.1699 |
Rwork | 0.165 |
R-free | 0.21930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ic1 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.310 |
High resolution limit [Å] | 2.250 | 5.290 | 2.250 |
Rmerge | 0.082 | 0.047 | 0.419 |
Rmeas | 0.091 | 0.052 | 0.477 |
Rpim | 0.037 | 0.022 | 0.220 |
Total number of observations | 87856 | ||
Number of reflections | 16168 | 1339 | 1145 |
<I/σ(I)> | 9.1 | ||
Completeness [%] | 98.8 | 99.5 | 92 |
Redundancy | 5.4 | 5.8 | 3.7 |
CC(1/2) | 0.998 | 0.642 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.1 M MES, 2 M ammonium sulfate, 2% PEG400 |