6BDD
Crystal structure of Fe(II) unliganded H-NOX protein from K. algicida
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2017-05-27 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.977 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.966, 57.613, 68.796 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.170 - 1.901 |
R-factor | 0.1951 |
Rwork | 0.193 |
R-free | 0.24210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4u99 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.648 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.170 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.110 | 0.670 |
Number of reflections | 15750 | 692 |
<I/σ(I)> | 9.78 | 2.41 |
Completeness [%] | 99.0 | 91.4 |
Redundancy | 6 | |
CC(1/2) | 0.616 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.1 M Tris-HCl, pH 8.5, 0.3 M LiCl, 34% (w/v) PEG 6000 |