6BAF
Structure of the chromophore binding domain of Stigmatella aurantiaca phytochrome P1, wild-type
Replaces: 4RPWExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-27 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.987 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 131.689, 131.689, 96.071 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 23.502 - 1.850 |
R-factor | 0.2117 |
Rwork | 0.211 |
R-free | 0.22830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4RPW |
RMSD bond length | 0.016 |
RMSD bond angle | 1.743 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 13.900 | 2.300 |
High resolution limit [Å] | 2.230 | 2.230 |
Rmerge | 0.084 | 1.070 |
Rpim | 0.073 | 0.900 |
Number of reflections | 81078 | 4168 |
<I/σ(I)> | 6.3 | 0.6 |
Completeness [%] | 99.0 | 99 |
Redundancy | 4.4 | 3.7 |
CC(1/2) | 0.995 | 0.360 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 280 | 65 mM Tris-HCl, pH 8.5, 5.2% w/v PEG8000, 35% v/v glycerol |