6B9V
Crystal Structure of a New Diphosphatase from the PhnP Family
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-25 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9786 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 125.780, 41.364, 96.034 |
Unit cell angles | 90.00, 95.20, 90.00 |
Refinement procedure
Resolution | 39.280 - 1.880 |
R-factor | 0.161 |
Rwork | 0.159 |
R-free | 0.19600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3py6 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.150 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.280 | 1.950 |
High resolution limit [Å] | 1.880 | 1.880 |
Rmerge | 0.068 | 0.579 |
Rmeas | 0.073 | |
Number of reflections | 40298 | 3875 |
<I/σ(I)> | 21.96 | 3.67 |
Completeness [%] | 99.6 | 96.97 |
Redundancy | 7.4 | 7.1 |
CC(1/2) | 0.999 | 0.892 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 100 mM CHES pH 9.5, 30% PEG-3000 |