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6B8F

Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-2
Synchrotron siteSSRL
BeamlineBL9-2
Temperature [K]100
Detector technologyPIXEL
Collection date2017-04-01
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameF 4 3 2
Unit cell lengths180.040, 180.040, 180.040
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.010 - 1.060
R-factor0.0916
Rwork0.091
R-free0.10260
RMSD bond length0.013
RMSD bond angle1.317
Data reduction softwareiMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.6501.080
High resolution limit [Å]1.0601.060
Rmerge0.0600.222
Number of reflections1111894683
<I/σ(I)>24.83.2
Completeness [%]99.086.4
Redundancy142.4
CC(1/2)0.9990.897
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293Reservoir: 500 uL of 25 mM HEPES pH 7.0 with 10 mM CaCl2 Well: 2 uL of reservoir solution and 2 uL of 2.5 uM ferritin (by 24-mer) in 15 mM TRIS pH 7.4 with 150 mM NaCl After crystals formed, a crystal was harvested and soaked in a buffered solution comprised of 25 mM HEPES pH 7.0, 30 mM CaCl2, 8.6 % (w/v) sodium acrylate, 2.5 % (w/v) acrylamide, and 0.2 % (w/v) Bis-acrylamide overnight. Crystal was transferred to a solution containing 1 % APS and 1% TEMED with 4 M NaCl for 5 min. Crystal was then transferred to a clean slide and soaked in 30 uL H2O for 5 min. This solution was removed and the crystal was soaked in 1 M CaCl2 for 2 min. The crystal was removed, cryoprotected in perfluoro polyether, and frozen in liquid N2.

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PDB entries from 2024-06-26

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