6B7F
Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with (R)-3,3-dimethyl-4-(5-vinyl-1H-imidazol-1-yl)isochroman-1-one
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-03-01 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.5418 |
Spacegroup name | I 2 3 |
Unit cell lengths | 135.780, 135.780, 135.780 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.361 - 2.562 |
R-factor | 0.1787 |
Rwork | 0.177 |
R-free | 0.20850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jbn |
RMSD bond length | 0.007 |
RMSD bond angle | 0.994 |
Data reduction software | iMOSFLM (7.2.1) |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHENIX (1.12_2829) |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 67.890 | 67.890 | 2.680 |
High resolution limit [Å] | 2.560 | 8.870 | 2.560 |
Rmerge | 0.097 | 0.019 | 0.594 |
Rmeas | 0.101 | 0.020 | 0.623 |
Rpim | 0.030 | 0.006 | 0.187 |
Total number of observations | 149733 | 3603 | 18096 |
Number of reflections | 13570 | 364 | 1647 |
<I/σ(I)> | 19.3 | 48.5 | 4.2 |
Completeness [%] | 100.0 | 99.2 | 100 |
Redundancy | 11 | 9.9 | 11 |
CC(1/2) | 0.999 | 1.000 | 0.912 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 1.8 M AMMONIUM SULFATE, 0.25 M POTASSIUM THIOCYANATE, 0.2 M POTASSIUM BROMIDE |