6B5H
ALDH1A2 liganded with NAD and 1-(4-cyanophenyl)-N-(3-fluorophenyl)-3-[4-(methylsulfonyl)phenyl]-1H-pyrazole-4-carboxamide (compound CM121)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-11-08 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 84.850, 141.860, 164.750 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 72.818 - 2.300 |
R-factor | 0.2067 |
Rwork | 0.206 |
R-free | 0.26350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6alj |
RMSD bond length | 0.002 |
RMSD bond angle | 0.541 |
Data scaling software | XSCALE |
Refinement software | PHENIX (1.11.1-2575_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 72.818 | 72.818 | 2.400 |
High resolution limit [Å] | 2.300 | 20.000 | 2.300 |
Rmerge | 0.079 | 0.039 | 0.642 |
Rmeas | 0.085 | 0.044 | 0.689 |
Total number of observations | 659332 | ||
Number of reflections | 88789 | 162 | 10489 |
<I/σ(I)> | 17.79 | 31.36 | 3.76 |
Completeness [%] | 99.8 | 93.6 | 99.6 |
Redundancy | 7.426 | 4.944 | 7.562 |
CC(1/2) | 0.999 | 0.999 | 0.892 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 40 mg/mL ALDH1A2, 0.2 M sodium citrate tribasic dehydrate, 25% w/v PEG3350, 1.3 mM CM121, 10% DMSO |