6AXY
Structure of the V11I/T58A/I124A mutant of the HIV-1 capsid protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2016-12-01 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.000031 |
Spacegroup name | P 6 |
Unit cell lengths | 91.915, 91.915, 57.919 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.960 - 2.780 |
R-factor | 0.2156 |
Rwork | 0.213 |
R-free | 0.26000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 4XFX |
RMSD bond length | 0.007 |
RMSD bond angle | 1.085 |
Data reduction software | Aimless (0.5.32) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.960 | 45.960 | 2.930 |
High resolution limit [Å] | 2.780 | 8.780 | 2.780 |
Rmerge | 0.109 | 0.036 | 1.050 |
Rmeas | 0.115 | 0.038 | 1.106 |
Rpim | 0.035 | 0.012 | 0.345 |
Total number of observations | 73644 | ||
Number of reflections | 6969 | 244 | 1008 |
<I/σ(I)> | 18 | ||
Completeness [%] | 97.3 | 98.7 | 97.3 |
Redundancy | 10.6 | 10.3 | 9.9 |
CC(1/2) | 0.999 | 0.999 | 0.754 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | PEG3350, NaI, Sodium cacodylate, Glycerol |