6AXX
Structure of the T58A/I124A mutant of the HIV-1 capsid protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2016-12-01 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.000031 |
Spacegroup name | P 6 |
Unit cell lengths | 91.646, 91.646, 57.695 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.800 - 2.600 |
R-factor | 0.1931 |
Rwork | 0.190 |
R-free | 0.24650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xfx |
RMSD bond length | 0.009 |
RMSD bond angle | 1.315 |
Data reduction software | Aimless (0.5.32) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (REFMAC 5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.820 | 45.820 | 2.710 |
High resolution limit [Å] | 2.600 | 9.000 | 2.600 |
Rmerge | 0.107 | 0.035 | 1.391 |
Rmeas | 0.112 | 0.037 | 1.469 |
Rpim | 0.034 | 0.012 | 0.466 |
Total number of observations | 91517 | 2271 | 9829 |
Number of reflections | 8617 | 221 | 1013 |
<I/σ(I)> | 18.3 | 67.9 | 1.6 |
Completeness [%] | 99.5 | 98.6 | 96 |
Redundancy | 10.6 | 10.3 | 9.7 |
CC(1/2) | 0.999 | 0.999 | 0.577 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | PEG3350, NaI, MIB, Glycerol |