6AWA
1.83 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Pseudomonas putida in Complex with FAD and Adenosine-5'-monophosphate.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-12 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 88.936, 113.089, 120.695 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.830 - 1.830 |
R-factor | 0.17735 |
Rwork | 0.176 |
R-free | 0.20069 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5tr3 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.429 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.860 |
High resolution limit [Å] | 1.830 | 1.830 |
Rmerge | 0.050 | 0.814 |
Rpim | 0.022 | 0.353 |
Number of reflections | 107766 | 5340 |
<I/σ(I)> | 34.2 | 2.3 |
Completeness [%] | 99.9 | 100 |
Redundancy | 6.2 | 6.2 |
CC(1/2) | 0.813 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 295 | Protein: 16.3 mg/ml, 0.5M Sodium chloride, 0.01M Tris HCl (pH 8.3), 1mM FAD;Screen: JCSG+ (G11), 2M Ammonium sulfate, 0.01M Bis-Tris HCl (pH 5.5);Cryo: 2M Ammonim sulfate, 25% sucrose. |