6APY
Scabin (W128Y) toxin from Streptomyces scabies
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-12 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 88.420, 60.750, 37.870 |
Unit cell angles | 90.00, 99.61, 90.00 |
Refinement procedure
Resolution | 37.340 - 1.500 |
Rwork | 0.150 |
R-free | 0.17920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5daz |
RMSD bond length | 0.008 |
RMSD bond angle | 0.912 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.340 | 37.340 | 1.550 |
High resolution limit [Å] | 1.500 | 3.230 | 1.500 |
Rmerge | 0.043 | 0.031 | 0.662 |
Rpim | 0.024 | 0.017 | 0.373 |
Number of reflections | 31670 | 3226 | 3152 |
<I/σ(I)> | 17.81 | 48.3 | 2.2 |
Completeness [%] | 99.8 | 99.7 | 99.9 |
Redundancy | 4.2 | 4.2 | 4.1 |
CC(1/2) | 0.999 | 0.999 | 0.767 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 14% PEG400, 0.1 M MES, pH 6.5 |