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6APY

Scabin (W128Y) toxin from Streptomyces scabies

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyCCD
Collection date2016-12-12
DetectorRAYONIX MX-300
Wavelength(s)0.979
Spacegroup nameC 1 2 1
Unit cell lengths88.420, 60.750, 37.870
Unit cell angles90.00, 99.61, 90.00
Refinement procedure
Resolution37.340 - 1.500
Rwork0.150
R-free0.17920
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5daz
RMSD bond length0.008
RMSD bond angle0.912
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]37.34037.3401.550
High resolution limit [Å]1.5003.2301.500
Rmerge0.0430.0310.662
Rpim0.0240.0170.373
Number of reflections3167032263152
<I/σ(I)>17.8148.32.2
Completeness [%]99.899.799.9
Redundancy4.24.24.1
CC(1/2)0.9990.9990.767
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.529814% PEG400, 0.1 M MES, pH 6.5

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