6ANZ
Crystal structure of a hypothetical protein from Neisseria gonorrhoeae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-06-23 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 49.930, 74.400, 78.560 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.459 - 1.600 |
R-factor | 0.1842 |
Rwork | 0.181 |
R-free | 0.21020 |
Structure solution method | SAD |
RMSD bond length | 0.011 |
RMSD bond angle | 1.081 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.459 | 41.459 | 1.640 |
High resolution limit [Å] | 1.600 | 7.160 | 1.600 |
Rmerge | 0.058 | 0.043 | 0.592 |
Rmeas | 0.063 | 0.049 | 0.649 |
Number of reflections | 19646 | 253 | 1411 |
<I/σ(I)> | 16.5 | 33.68 | 2.78 |
Completeness [%] | 99.7 | 96.9 | 98.7 |
Redundancy | 6.056 | 5.123 | 5.905 |
CC(1/2) | 0.998 | 0.994 | 0.873 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 290 | Native protein: Micolytic MCSG1 D8 (1.5 M ammonium sulfate, 100 mM sodium chloride, 100 mM Bis-Tris/HCl, pH 6.5), 25.6 mg/mL NegoA.19190.a.B1.PS38056, cryoprotectant: 25% ethylene glycol, puck MXK4-1, tray 285291d8, I222 crystal form | |
2 | VAPOR DIFFUSION, SITTING DROP | 9 | 289 | Iodide soak for phasing: RigakuReagents JCSG+ C10 (10% PEG20000, 2% dioxane, 100 mM Bicine/NaOH, pH 9.0), 25.6 mg/mL NegoA.19190.a.B1.PS38056, crystal soaked in 20% ethylene glycol and 2.5 M sodium iodide, then flash frozen, puck ZDJ2-5, tray 285290 c10, P212121 crystal form |