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6ANZ

Crystal structure of a hypothetical protein from Neisseria gonorrhoeae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2017-06-23
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameI 2 2 2
Unit cell lengths49.930, 74.400, 78.560
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution41.459 - 1.600
R-factor0.1842
Rwork0.181
R-free0.21020
Structure solution methodSAD
RMSD bond length0.011
RMSD bond angle1.081
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.7.17)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]41.45941.4591.640
High resolution limit [Å]1.6007.1601.600
Rmerge0.0580.0430.592
Rmeas0.0630.0490.649
Number of reflections196462531411
<I/σ(I)>16.533.682.78
Completeness [%]99.796.998.7
Redundancy6.0565.1235.905
CC(1/2)0.9980.9940.873
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP290Native protein: Micolytic MCSG1 D8 (1.5 M ammonium sulfate, 100 mM sodium chloride, 100 mM Bis-Tris/HCl, pH 6.5), 25.6 mg/mL NegoA.19190.a.B1.PS38056, cryoprotectant: 25% ethylene glycol, puck MXK4-1, tray 285291d8, I222 crystal form
2VAPOR DIFFUSION, SITTING DROP9289Iodide soak for phasing: RigakuReagents JCSG+ C10 (10% PEG20000, 2% dioxane, 100 mM Bicine/NaOH, pH 9.0), 25.6 mg/mL NegoA.19190.a.B1.PS38056, crystal soaked in 20% ethylene glycol and 2.5 M sodium iodide, then flash frozen, puck ZDJ2-5, tray 285290 c10, P212121 crystal form

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