6AMZ
Crystal structure of a domain swapped 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Acinetobacter baumannii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-06-23 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | H 3 2 |
Unit cell lengths | 92.250, 92.250, 218.440 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.331 - 2.050 |
R-factor | 0.1575 |
Rwork | 0.155 |
R-free | 0.18220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3gos |
RMSD bond length | 0.007 |
RMSD bond angle | 0.775 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.331 | 38.331 | 2.100 |
High resolution limit [Å] | 2.050 | 9.170 | 2.050 |
Rmerge | 0.044 | 0.020 | 0.518 |
Rmeas | 0.047 | 0.022 | 0.551 |
Number of reflections | 22813 | 289 | 1648 |
<I/σ(I)> | 29.09 | 74.11 | 3.91 |
Completeness [%] | 99.9 | 96.7 | 100 |
Redundancy | 8.612 | 7.121 | 8.74 |
CC(1/2) | 1.000 | 1.000 | 0.939 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.3 | 289 | AcbaC.00002.a.B1.PS02398 at 23.06 mg/mL against JCSG A4 optimization screen containing 20 mM CaCl2, 38% MPD, 0.1 M sodium acetate pH 4.3, crystal tracking ID 291434c11, unique puck ID stc4-1 |