6AM5
Crystal structure of DMF5 TCR bound to HLA-A2 presenting synthetic peptide SMLGIGIVPV
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-23 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 228.106, 49.900, 92.455 |
Unit cell angles | 90.00, 95.72, 90.00 |
Refinement procedure
Resolution | 38.754 - 2.394 |
R-factor | 0.2033 |
Rwork | 0.201 |
R-free | 0.24370 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.575 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.440 |
High resolution limit [Å] | 2.400 | 6.510 | 2.400 |
Rmerge | 0.061 | 0.036 | 0.533 |
Rmeas | 0.072 | 0.043 | 0.624 |
Rpim | 0.037 | 0.022 | 0.322 |
Total number of observations | 152065 | ||
Number of reflections | 40458 | 2090 | 1993 |
<I/σ(I)> | 8.7 | ||
Completeness [%] | 98.0 | 95.9 | 98.5 |
Redundancy | 3.8 | 3.6 | 3.7 |
CC(1/2) | 0.997 | 0.852 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.1 | 298 | 13% PEG3350, 0.25 M magnesium chloride, 0.1 M Tris |