6AL2
Crystal structure of E. coli YidC at 2.8 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-20 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 |
Unit cell lengths | 42.910, 76.190, 91.950 |
Unit cell angles | 78.03, 82.61, 78.05 |
Refinement procedure
Resolution | 41.842 - 2.800 |
R-factor | 0.2226 |
Rwork | 0.218 |
R-free | 0.27490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wvf |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.7.15) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.842 | 41.842 | 2.970 |
High resolution limit [Å] | 2.800 | 8.370 | 2.800 |
Rmerge | 0.333 | 0.142 | 1.361 |
Rmeas | 0.355 | 0.150 | 1.450 |
Total number of observations | 228470 | ||
Number of reflections | 27283 | 1013 | 4416 |
<I/σ(I)> | 5.64 | 17.11 | 1.34 |
Completeness [%] | 99.8 | 99 | 99.8 |
Redundancy | 8.374 | 9.154 | 8.575 |
CC(1/2) | 0.978 | 0.984 | 0.753 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 5 | 293 | 30% PEG 600, KSCN, Na-acetate |